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Tracking Biofilms Using an Electrochemical Quartz Crystal Microbalance


Biofilms are microbes attached to a surface. The microbes form a film on the surface, giving rise to the name biofilm. This Application Note deals specifically with bacterial biofilms that convert chemicals to electrical current on electrodes. Because of this function, we refer to them as electrochemically active biofilms (EABs). Interest in EABs ranges from their function as bioanodes and biocathodes in microbial fuel cells to new types of biosensors as well as novel biosynthesis of sustainable chemicals.

This application note shows results for Geobacter sulfurreducens, an oxygen-intolerant species of bacteria able to grow on electrodes.[1]

If you are not familiar with quartz-crystal microbalances, see our Application Note “Basics of a quartz crystal microbalance”.

Experimental Notes

Culturing of G. sulfurreducens biofilms is not discussed in this Application Note. G. sulfurreducens is a non-pathogenic BSL-1 biological agent.

Unlike typical electrochemical experiments, current must be collected over several days to give time for the biofilm to grow. Choose an appropriate sampling rate, such as one measurement every five minutes. We show only one day of growth.

Gamry’s jacketed EuroCell™ Electrochemical Cell Kit was used as the reactor vessel. An eSorptionProbe (Part No. 971-18) with 10 MHz Au-coated crystals was used. A saturated Ag/AgCl electrode was used as reference.

All parts of the reactor vessel were sterilized prior to biofilm growth.[2] The assembled reactor vessel was therefore sterile. Biological growth medium was then added. Oxygen was purged from the vessel using a gas mixture of 20% CO2 and 80% N2. The electrode potential was then fixed to 0 VAg/AgCl using Gamry’s Framework™ software with the chronoamperometry script. A suspended cell culture of G. sulfurreducens was added and current was recorded.


Basics of biofilm growth

Photograph of biofilm grown on the 10 MHz Au-coated crystal for the eSorptionPro
Figure 1. Photograph of biofilm grown on the 10 MHz Au-coated crystal for the eSorptionProbe.

Biofilm can be grown on the Au-coated crystal (Figure 1). The pink hue on the Au surface is the biofilm. The biofilm is only found on Au because the electrode is the electron sink for the electrons generated from the biofilm metabolizing acetate (a source of organic carbon). In order to survive and grow, the biofilm must have an electron sink. As a result, surfaces such as the plastic coating that do not accept electrons show no biofilm growth. When studying EABs, the electrochemical system is designed so that the only electron sink is the electrode. The electrochemical half-reaction occurring at the electrode is:

The electrochemical half-reaction occurring at the electrode

The biofilm acts as a catalyst for the electrochemical conversion of acetate to carbon dioxide. The half-reaction above is an overall description of what happens in an individual cell in the biofilm. It does not account for carbon assimilation as biomass. The exact path through which electrons follow to reach the electrode surface is complex and not discussed in this Application Note.

For G. sulfurreducens biofilm, the acetate half-reaction is activated at electrode potentials more positive than approximately −0.4 VAg/AgCl. This measured value is true for most Au and C surfaces. Figure 2 shows the result of fixing the electrode potential to 0 VAg/AgCl in the presence of G. sulfurreducens cells and acetate. Cells that attach to the electrode form the initial biofilm. To survive, the initial biofilm metabolizes acetate and produces electrons. This produces an electron flow and is the cause of the increase in current in Figure 2.

Current output over time of a growing G. sulfurreducens biofilm. The electrode p
Figure 2. Current output over time of a growing G. sulfurreducens biofilm. The electrode potential was fixed at 0 VAg/AgCl.

As the biofilm grows, current increases. In effect, the current output over time for EABs is a growth curve. Exponential growth can be easily checked by plotting the data in Figure 2 on a semilogarithmic plot (Figure 3). The initial region is the pre-exponential growth phase or lag phase. The linear region is exponential biofilm growth.

Semilogarithmic plot of current output over time. The linear region reflects exp
Figure 3. Semilogarithmic plot of current output over time. The linear region reflects exponential biofilm growth.

Standard practice is to confirm existence of the biofilm by using scanning electron microscopy. Figure 4 shows a micrograph of the biofilm after fixation (standard procedure). The flat background is the bare Au surface. The biofilm was purposely removed to show the Au surface and biofilm in the same image. The micrograph is a visual indication that biofilm produced the current observed. If the biofilm is distinct like the pink hue in Figure 1, a photograph may be sufficient.

After fixation, the biofilm is no longer alive. Single cells and multi-layered c
Figure 4. Scanning electron micrograph of the biofilm on the Au-coated crystal after growth and a standard fixation procedure. After fixation, the biofilm is no longer alive. Single cells and multi-layered cell clusters are visible.

Biofilm voltammetry

During biofilm growth, the chronoamperometry script can be stopped without damaging the biofilm. This is valuable for a simple voltammetric sweep. Usually cyclic voltammetry is the preferred script because of its simplicity. Figure 5 shows two cyclic voltammograms of a growing biofilm (replicate) at 44 hours and 49 hours of growth. A catalytic wave is observed with several redox peaks superimposed between −0.33 VAg/AgCl to −0.23 VAg/AgCl. As the scan reached positive potentials, the effect of the redox peaks is minimized. In this potential region, limiting current is observed. The height of the catalytic wave increases with biofilm growth.

Cyclic voltammograms of a G. sulfurreducens biofilm during growth.
Figure 5. Cyclic voltammograms of a G. sulfurreducens biofilm during growth. Scan rate was 30 mV/s. (Note that the chronoamperometry scan was stopped in order to run the cyclic voltammetry script.)

QCM frequency shift

Cell attachment and biofilm growth can be monitored in real-time using Gamry’s electrochemical quartz-crystal microbalance (eQCM). Using the Gamry Resonator™ software, both series frequency-shift (dFseries) and current can be recorded simultaneously. Figure 6 shows dFseries and Reduced Q (secondary y-axis) during biofilm growth. This was recorded simultaneously with the current shown in Figure 2. The graphs are separated for clarity.

Response to biofilm growth on the QCM
Figure 6. dFseries and Reduced Q over time decreasing in response to biofilm growth on the QCM. These data were taken simultaneously with the current data from Figure 2.

During the time it took the biofilm to reach a current output of 40 µA in Figure 2, dFseries reached −1250 Hz. Usually, for rigid films, dFseries can be converted to mass using the Sauerbrey Equation. However, the decrease in Reduced Q from 1500 to 1000 indicates a significant decrease in the rigidity of the biofilm. As a reference, a −1800 Hz dFseries shift during copper plating onto the QCM results in a minimal decrease in Reduced Q from 1280 to 1240. The important point is that it is typically incorrect to use the Sauerbrey Equation to convert dFseries to mass for a biofilm, because of the biofilm’s viscous nature.

For most rigid film depositions using the eQCM, a plot of dFseries vs charge yields a straight line (for example, copper plating). In the case of G. sulfurreducens biofilm, this is not true.2 The reason is that charge passed does not determine how much biofilm has grown on the electrode surface. For example, it is possible to have the total charge passed at the electrode increase with time without biofilm growth. Current passed over time is more relevant for G. sulfurreducens biofilm because current is a proxy for biofilm growth. Figure 7 confirms this expectation and shows a linear correlation between dFseries and current.

 dFseries vs current
Figure 7. dFseries vs. current (linear fit in red).


This application note introduces electrochemically active biofilms to researchers outside of the field, and shows how the eQCM can be integrated into basic electrochemical techniques. It may also be useful to high school, undergraduate, or new graduate students who want to learn more about the techniques used to study electrochemically active biofilms. QCMs have a variety of uses in addition to monitoring biofilm growth:

  • Chemical and biological sensors
  • Electropolymerization
  • Li+ intercalation
  • Corrosion studies
  • Electrodeposition

Gamry Instruments would like to acknowledge Dr. Jerome T. Babauta and Professor Haluk Beyenal of the Biofilms Research Group at Washington State University for the generation of these data.

[1] Bond, D.R. and Lovley, D.R., Electricity production by Geobacter sulfurreducens attached to electrodes, Appl. Environ. Microb. 2003, 69(3), 1548−1555.

[2] Babauta, J.T.; Beasley, C.A., and Beyenal, H., Investigation of Electron Transfer by Geobacter sulfurreducens Biofilms by using an Electrochemical Quartz Crystal Microbalance, ChemElectroChem 2014, 1(11), 2007−2016.